Useful scripts for iff105
To download the scripts right click on the relative link and select "Save link as"
Monitor - A script to have an overview on the load status of the iff105 nodes:USAGE: monitor --> for a short help
monitor all --> to have a report from all the nodes
monitor X1 to X2 --> to have a report from node iff105cX1 to node iff105cX2
monitor X1 X2 ... --> to have a report from nodes iff105cX1, iff105cX2, ...
Add "d" at the end of the command to have the report in debug mode
Gotofreenode - A script to enter the first free node available on the cluster:
USAGE: gotofreenode --> to go to the first free node available
gotofreenode n --> to go to the first not full node available
gotofreenode <num> --> to go to the first node available that has less than <num> cores occupied
Killer - A script to find and kill a job whose log only is known:
USAGE: killer --> to get the help
killer <FILE> --> to look for the nodes accessing FILE
killer <FILE> k --> to kill all the processes accessing FILE
Siff105 - A script to transfer files from and to the iff105 common space:
USAGE: siff105 --> for a short help
siff105 file1 file2 ... <iff105 folder> --> to transfer file1, file2, etc to iff105 folder
siff105 in path1/file1 path2/file2 ... <local folder> --> to transfer file1, file2 etc in iff105 to the local folder
Multiple_job_namd_generator.sh - A script to generate a launch script for JUGENE scheduling system to submit multiple NAMD jobs in sequence in order to divide the dynamics in small parts, to use the "small" queue (00:30:00 max runtime) and therefore to be able to select a small number of cores (saving cputime), without having to check and restart the simulation after each step:
USAGE: Put all the initial files in the same directory. Launch the script and insert the data required on the screen